Pacote: jellyfish (2.3.1-4 e outros)

[ Fonte: jellyfish  ]

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

Outros pacotes relacionados a jellyfish

• dep: libc6 (>= 2.38)

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

• dep: libgcc-s1 (>= 3.0) [não riscv64]

  Biblioteca de suporte GCC

  dep: libgcc-s1 (>= 3.4) [riscv64]

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libjellyfish-2.0-2 (= 2.3.1-4+b1)

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: libstdc++6 (>= 14)

  Biblioteca C++ padrão da GNU v3

Download de jellyfish

Baixe para todas as arquiteturas disponíveis

Arquitetura	Versão	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	2.3.1-4+b1	788.6 kB	2,527.0 kB	[lista de arquivos]
arm64	2.3.1-4+b1	709.1 kB	2,511.0 kB	[lista de arquivos]
mips64el	2.3.1-4+b1	665.5 kB	3,082.0 kB	[lista de arquivos]
ppc64el	2.3.1-4+b1	746.0 kB	2,895.0 kB	[lista de arquivos]
riscv64	2.3.1-4+b1	755.3 kB	1,963.0 kB	[lista de arquivos]