[ 原始碼： jellyfish ]
套件：jellyfish（2.3.1-4）
jellyfish 的相關連結
Debian 的資源：
下載原始碼套件 jellyfish：
維護小組：
- Debian Med Packaging Team (QA 頁面, 郵件存檔)
- Shaun Jackman (QA 頁面)
- Andreas Tille (QA 頁面)
- Michael R. Crusoe (QA 頁面)
- Étienne Mollier (QA 頁面)
外部的資源：
- 主頁 [www.genome.umd.edu]
相似套件：
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
其他與 jellyfish 有關的套件
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- dep: libc6 (>= 2.38)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [除 riscv64]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.4) [riscv64]
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libjellyfish-2.0-2 (= 2.3.1-4)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3