Pacote: jellyfish (2.3.0-10)

[ Fonte: jellyfish  ]

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

Outros pacotes relacionados a jellyfish

• dep: libc6 (>= 2.29)

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

• dep: libgcc-s1 (>= 3.0) [não armel, armhf, i386]

  Biblioteca de suporte GCC

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libjellyfish-2.0-2 (= 2.3.0-10)

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: libstdc++6 (>= 9)

  Biblioteca C++ padrão da GNU v3

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Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	771.0 kB	2,485.0 kB	[lista de arquivos]
arm64	688.8 kB	2,297.0 kB	[lista de arquivos]
armel	639.3 kB	1,847.0 kB	[lista de arquivos]
armhf	664.7 kB	1,435.0 kB	[lista de arquivos]
i386	750.8 kB	2,251.0 kB	[lista de arquivos]
mips64el	651.8 kB	2,991.0 kB	[lista de arquivos]
ppc64el	739.1 kB	2,957.0 kB	[lista de arquivos]