Пакет: jellyfish (2.3.1-4)

[ Източник: jellyfish  ]

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

Други пакети, свързани с jellyfish

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgcc-s1 (>= 3.0) [не riscv64]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [riscv64]

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libjellyfish-2.0-2 (= 2.3.1-4)

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

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amd64	788,8 кБ	2 526,0 кБ	[списък на файловете]
arm64	708,1 кБ	2 510,0 кБ	[списък на файловете]
mips64el	665,6 кБ	3 081,0 кБ	[списък на файловете]
ppc64el	744,5 кБ	2 894,0 кБ	[списък на файловете]
riscv64	755,4 кБ	1 962,0 кБ	[списък на файловете]