Paket: jellyfish (2.3.1-4 och andra)

[ Källkod: jellyfish  ]

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

Andra paket besläktade med jellyfish

• dep: libc6 (>= 2.38)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0) [ej riscv64]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.4) [riscv64]

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libjellyfish-2.0-2 (= 2.3.1-4+b1)

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: libstdc++6 (>= 14)

  GNU standardbibliotek v3 för C++

Hämta jellyfish

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	2.3.1-4+b1	788,6 kbyte	2.527,0 kbyte	[filförteckning]
arm64	2.3.1-4+b1	709,1 kbyte	2.511,0 kbyte	[filförteckning]
mips64el	2.3.1-4+b1	665,5 kbyte	3.082,0 kbyte	[filförteckning]
ppc64el	2.3.1-4+b1	746,0 kbyte	2.895,0 kbyte	[filförteckning]
riscv64	2.3.1-4+b1	755,3 kbyte	1.963,0 kbyte	[filförteckning]