Package: python3-unifrac (1.3-4 and others)

[ Source: unifrac  ]

high-performance phylogenetic diversity calculations

The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation.

This package contains the Python3 module.

Other Packages Related to python3-unifrac

• dep: cython3 [alpha, m68k]

  extensões C para Python 3

• dep: libc6 (>= 2.14) [amd64]

  GNU Biblioteca C: Bibliotecas compartilhadas
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.4) [m68k, mips64el]

• dep: libc6.1 (>= 2.4) [alpha]

  GNU Biblioteca C: Bibliotecas compartilhadas
  also a virtual package provided by libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [alpha]

  Biblioteca de suporte GCC

• dep: libssu0 (>= 0.10.0) [alpha]

  high-performance phylogenetic diversity calculations (lib)

  dep: libssu0 (>= 1.1.1) [m68k]

  dep: libssu0 (>= 1.4) [not alpha, m68k]

• dep: libstdc++6 (>= 11) [alpha]

  Biblioteca C++ padrão da GNU v3

• dep: python3

  linguagem orientada a objetos de alto nível e interativa (versão python3 padrão)

  dep: python3 (<< 3.11) [alpha]

  dep: python3 (<< 3.12) [m68k]

  dep: python3 (<< 3.14) [not alpha, m68k]

  dep: python3 (>= 3.10~) [alpha, m68k]

  dep: python3 (>= 3.12~) [not alpha, m68k]

• dep: python3-biom-format

  Biological Observation Matrix (BIOM) format (Python 3)

• dep: python3-h5py (>= 3.3.0) [not alpha, m68k]

  general-purpose Python interface to hdf5

• dep: python3-h5py-serial [alpha, m68k]

  general-purpose Python interface to hdf5 (Python 3 serial)

• dep: python3-iow [not alpha]

  balanced parentheses tree structure

• dep: python3-numpy [alpha, m68k]

  Fast array facility to the Python language (Python 3)

  dep: python3-numpy (>= 1:1.25.0) [not alpha, m68k]

• dep: python3-numpy-abi9 [not alpha, m68k]

  virtual package provided by python3-numpy

• dep: python3-skbio [alpha, m68k]

  Python3 data structures, algorithms, educational resources for bioinformatic

  dep: python3-skbio (>= 0.6.1) [not alpha, m68k]

Download python3-unifrac

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.10.0-3	106.4 kB	582.0 kB	[list of files]
amd64	1.3-4+b1	186.4 kB	1,022.0 kB	[list of files]
arm64	1.3-4+b1	158.6 kB	950.0 kB	[list of files]
m68k (unofficial port)	1.1.1-2	135.9 kB	715.0 kB	[list of files]
mips64el	1.3-4+b1	156.2 kB	1,092.0 kB	[list of files]
ppc64el	1.3-4+b1	178.9 kB	1,078.0 kB	[list of files]
riscv64	1.3-4+b1	183.7 kB	870.0 kB	[list of files]