Package: fasttree (2.1.11-2 and others)

Links for fasttree

Debian Resources:

Download Source Package fasttree:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Steffen Moeller (QA Page)
Thorsten Alteholz (QA Page)
Andreas Tille (QA Page)
Roland Fehrenbacher (QA Page)

External Resources:

Homepage [www.microbesonline.org]

Similar packages:

phylogenetic trees from alignments of nucleotide or protein sequences

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.

FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").

This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).

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dep: libc6 (>= 2.31) [sh4]

dep: libc6 (>= 2.34) [arm64, riscv64]
dep: libc6.1 (>= 2.29) [alpha]

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dep: libc6.1 (>= 2.31) [ia64]
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Download fasttree

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.1.11-2	176.6 kB	531.0 kB	[list of files]
amd64	2.1.11-2	176.6 kB	483.0 kB	[list of files]
arm64	2.1.11-2+b1	171.2 kB	507.0 kB	[list of files]
armel	2.1.11-2	172.2 kB	509.0 kB	[list of files]
armhf	2.1.11-2	164.9 kB	385.0 kB	[list of files]
hppa (unofficial port)	2.1.11-2	170.8 kB	471.0 kB	[list of files]
i386	2.1.11-2	178.9 kB	517.0 kB	[list of files]
ia64 (unofficial port)	2.1.11-2	208.6 kB	857.0 kB	[list of files]
m68k (unofficial port)	2.1.11-2	161.9 kB	465.0 kB	[list of files]
mips64el	2.1.11-2	171.5 kB	527.0 kB	[list of files]
ppc64 (unofficial port)	2.1.11-2	181.7 kB	635.0 kB	[list of files]
ppc64el	2.1.11-2	181.9 kB	635.0 kB	[list of files]
riscv64	2.1.11-2+b1	178.3 kB	423.0 kB	[list of files]
s390x	2.1.11-2	166.4 kB	493.0 kB	[list of files]
sh4 (unofficial port)	2.1.11-2	187.7 kB	441.0 kB	[list of files]
sparc64 (unofficial port)	2.1.11-2	163.5 kB	493.0 kB	[list of files]
x32 (unofficial port)	2.1.11-2	175.3 kB	469.0 kB	[list of files]