Pakket: fasttree (2.1.11-2 en anderen)

Verwijzigingen voor fasttree

Debian bronnen:

Het bronpakket fasttree downloaden:

Beheerders:

Externe bronnen:

Homepage [www.microbesonline.org]

Vergelijkbare pakketten:

phylogenetic trees from alignments of nucleotide or protein sequences

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.

FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").

This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).

Andere aan fasttree gerelateerde pakketten

depends

recommends

suggests

enhances

dep: libc6 (>= 2.29) [niet alpha, arm64, ia64, riscv64, sh4]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb

dep: libc6 (>= 2.31) [sh4]

dep: libc6 (>= 2.34) [arm64, riscv64]
dep: libc6.1 (>= 2.29) [alpha]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6.1-udeb

dep: libc6.1 (>= 2.31) [ia64]
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library

fasttree downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.1.11-2	176,6 kB	531,0 kB	[overzicht]
amd64	2.1.11-2	176,6 kB	483,0 kB	[overzicht]
arm64	2.1.11-2+b1	171,2 kB	507,0 kB	[overzicht]
armel	2.1.11-2	172,2 kB	509,0 kB	[overzicht]
armhf	2.1.11-2	164,9 kB	385,0 kB	[overzicht]
hppa (unofficial port)	2.1.11-2	170,8 kB	471,0 kB	[overzicht]
i386	2.1.11-2	178,9 kB	517,0 kB	[overzicht]
ia64 (unofficial port)	2.1.11-2	208,6 kB	857,0 kB	[overzicht]
m68k (unofficial port)	2.1.11-2	161,9 kB	465,0 kB	[overzicht]
mips64el	2.1.11-2	171,5 kB	527,0 kB	[overzicht]
ppc64 (unofficial port)	2.1.11-2	181,7 kB	635,0 kB	[overzicht]
ppc64el	2.1.11-2	181,9 kB	635,0 kB	[overzicht]
riscv64	2.1.11-2+b1	178,3 kB	423,0 kB	[overzicht]
s390x	2.1.11-2	166,4 kB	493,0 kB	[overzicht]
sh4 (unofficial port)	2.1.11-2	187,7 kB	441,0 kB	[overzicht]
sparc64 (unofficial port)	2.1.11-2	163,5 kB	493,0 kB	[overzicht]
x32 (unofficial port)	2.1.11-2	175,3 kB	469,0 kB	[overzicht]