Pacote: fasttree (2.1.11-2)

[ Fonte: fasttree  ]

phylogenetic trees from alignments of nucleotide or protein sequences

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.

FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").

This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).

Outros pacotes relacionados a fasttree

• dep: libc6 (>= 2.29)

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

• dep: libgomp1 (>= 6)

  biblioteca de suporte ao GCC OpenMP (GOMP)

Download de fasttree

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	176.6 kB	483.0 kB	[lista de arquivos]
arm64	167.5 kB	465.0 kB	[lista de arquivos]
armel	172.2 kB	509.0 kB	[lista de arquivos]
armhf	164.9 kB	385.0 kB	[lista de arquivos]
i386	178.9 kB	517.0 kB	[lista de arquivos]
mips64el	171.5 kB	527.0 kB	[lista de arquivos]
mipsel	171.8 kB	515.0 kB	[lista de arquivos]
ppc64el	181.9 kB	635.0 kB	[lista de arquivos]
s390x	166.4 kB	493.0 kB	[lista de arquivos]