Package: ariba (2.14.7+ds-2 and others) [debports]

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Antibiotic Resistance Identification By Assembly

ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.

Other Packages Related to ariba

• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: cd-hit

  suite of programs designed to quickly group sequences

• dep: fastaq

  FASTA and FASTQ file manipulation tools

• dep: libc6.1 (>= 2.1.3)

  GNU Biblioteca C: Bibliotecas compartilhadas
  also a virtual package provided by libc6.1-udeb

• dep: libfml0 (>= 0.1)

  library for assembling Illumina short reads in small regions

• dep: libgcc-s1 (>= 3.0)

  Biblioteca de suporte GCC

• dep: libminimap0 (>= 0.2)

  library for approximate mapping of long biosequences

• dep: libstdc++6 (>= 13.1)

  Biblioteca C++ padrão da GNU v3

• dep: mash

  fast genome and metagenome distance estimation using MinHash

• dep: mummer

  alinhamento eficiente de seqüência para genomas completos

• dep: python3

  linguagem orientada a objetos de alto nível e interativa (versão python3 padrão)

  dep: python3 (<< 3.13)

  dep: python3 (>= 3.12~)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-bs4 (>= 4.1.0)

  error-tolerant HTML parser for Python 3

• dep: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab

• dep: python3-pymummer

  Python 3 interface to MUMmer

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-tk

  Tkinter - Writing Tk applications with Python 3.x

• dep: zlib1g (>= 1:1.1.4)

  biblioteca de compressão - runtime (tempo de execução)

• sug: spades

  genome assembler for single-cell and isolates data sets

Download ariba

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.14.7+ds-2+b1	1,908.5 kB	20,532.0 kB	[list of files]