Paket: ariba (2.14.7+ds-2 och andra) [debports]

[ Källkod:  ]

Antibiotic Resistance Identification By Assembly

ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.

Andra paket besläktade med ariba

• dep: bowtie2

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• dep: cd-hit

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• dep: fastaq

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• dep: libc6.1 (>= 2.1.3)

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• dep: libfml0 (>= 0.1)

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• dep: libgcc-s1 (>= 3.0)

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• dep: libminimap0 (>= 0.2)

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• dep: libstdc++6 (>= 13.1)

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• dep: mash

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• dep: mummer

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• dep: python3

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  dep: python3 (<< 3.13)

  dep: python3 (>= 3.12~)

• dep: python3-biopython

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• dep: python3-bs4 (>= 4.1.0)

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• dep: python3-dendropy

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• dep: python3-matplotlib

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• dep: python3-pymummer

  Python 3 interface to MUMmer

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-tk

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• dep: zlib1g (>= 1:1.1.4)

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• sug: spades

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Hämta ariba

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	2.14.7+ds-2+b1	1.908,5 kbyte	20.532,0 kbyte	[filförteckning]