Balík: ariba (2.14.7+ds-2 a iné) [debports]
Odkazy pre ariba
Zdroje Debian:
Stiahnuť zdrojový balík :
NenájdenýSprávcovia:
Externé zdroje:
- Domovská stránka [github.com]
Podobné balíky:
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.
Ostatné balíky súvisiace s balíkom ariba
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: fastaq
- FASTA and FASTQ file manipulation tools
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- dep: libc6.1 (>= 2.1.3)
- knižnica GNU C - zdieľané knižnice
tiež virtuálny balík poskytovaný balíkom libc6.1-udeb
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- dep: libfml0 (>= 0.1)
- library for assembling Illumina short reads in small regions
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- dep: libgcc-s1 (>= 3.0)
- podporná knižnica GCC
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- dep: libminimap0 (>= 0.2)
- library for approximate mapping of long biosequences
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- dep: libstdc++6 (>= 13.1)
- štandardná knižnica C++ GNU v3
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- dep: mash
- fast genome and metagenome distance estimation using MinHash
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- dep: mummer
- Efficient sequence alignment of full genomes
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.13)
- dep: python3 (>= 3.12~)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-bs4 (>= 4.1.0)
- syntaktický analyzátor HTML tolerantný k chybám pre Python 3
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
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- dep: python3-matplotlib
- systém v Pythone na vykresľovanie v štýle podobnom Matlabu
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- dep: python3-pymummer
- Python 3 interface to MUMmer
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-tk
- Tkinter - Writing Tk applications with Python 3.x
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- dep: zlib1g (>= 1:1.1.4)
- komprimačná knižnica - dynamická verzia
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- sug: spades
- genome assembler for single-cell and isolates data sets
Stiahnuť ariba
Architektúra | Verzia | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
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alpha (neoficiálny port) | 2.14.7+ds-2+b1 | 1,908.5 kB | 20,532.0 kB | [zoznam súborov] |