Balík: ariba (2.14.7+ds-2 a iné) [debports]

[ Zdroj:  ]

Antibiotic Resistance Identification By Assembly

ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.

Ostatné balíky súvisiace s balíkom ariba

• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: cd-hit

  suite of programs designed to quickly group sequences

• dep: fastaq

  FASTA and FASTQ file manipulation tools

• dep: libc6.1 (>= 2.1.3)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6.1-udeb

• dep: libfml0 (>= 0.1)

  library for assembling Illumina short reads in small regions

• dep: libgcc-s1 (>= 3.0)

  podporná knižnica GCC

• dep: libminimap0 (>= 0.2)

  library for approximate mapping of long biosequences

• dep: libstdc++6 (>= 13.1)

  štandardná knižnica C++ GNU v3

• dep: mash

  fast genome and metagenome distance estimation using MinHash

• dep: mummer

  Efficient sequence alignment of full genomes

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.13)

  dep: python3 (>= 3.12~)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-bs4 (>= 4.1.0)

  syntaktický analyzátor HTML tolerantný k chybám pre Python 3

• dep: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

• dep: python3-matplotlib

  systém v Pythone na vykresľovanie v štýle podobnom Matlabu

• dep: python3-pymummer

  Python 3 interface to MUMmer

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-tk

  Tkinter - Writing Tk applications with Python 3.x

• dep: zlib1g (>= 1:1.1.4)

  komprimačná knižnica - dynamická verzia

• sug: spades

  genome assembler for single-cell and isolates data sets

Stiahnuť ariba

Stiahnuť pre všetky dostupné architektúry

Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
alpha (neoficiálny port)	2.14.7+ds-2+b1	1,908.5 kB	20,532.0 kB	[zoznam súborov]