Package: stacks (2.2+dfsg-1)

[ Source: stacks  ]

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

Other Packages Related to stacks

• dep: libc6 (>= 2.17)

  GNU Biblioteca C: Bibliotecas compartilhadas
  also a virtual package provided by libc6-udeb

• dep: libdbi-perl

  Database Interface (DBI) para Perl

• dep: libgcc1 (>= 1:3.0) [not armhf]

  Biblioteca de suporte GCC

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libgomp1 (>= 4.9)

  biblioteca de suporte ao GCC OpenMP (GOMP)

• dep: libhts2 (>= 1.0)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 5.2)

  Biblioteca C++ padrão da GNU v3

• dep: python

  linguagem interativa de alto nível orientada a objetos (versão Python2)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.6)

  biblioteca de compressão - runtime (tempo de execução)

• rec: libspreadsheet-writeexcel-perl

  module to create Excel spreadsheets

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Architecture	Package Size	Installed Size	Files
amd64	927.4 kB	4,887.0 kB	[list of files]
arm64	814.6 kB	4,373.0 kB	[list of files]
armhf	772.8 kB	2,869.0 kB	[list of files]