Package: hinge (0.5.0-4)

[ Source: hinge  ]

long read genome assembler based on hinging

HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.

Other Packages Related to hinge

• dep: daligner

  local alignment discovery between long nucleotide sequencing reads

• dep: dascrubber

  alignment-based scrubbing pipeline for DNA sequencing reads

• dep: dazzdb

  manage nucleotide sequencing read data

• dep: libc6 (>= 2.27)

  GNU Biblioteca C: Bibliotecas compartilhadas
  also a virtual package provided by libc6-udeb

• dep: libgcc1 (>= 1:3.0) [amd64]

  Biblioteca de suporte GCC

  dep: libgcc1 (>= 1:4.5) [arm64]

• dep: libgomp1 (>= 4.2.1)

  biblioteca de suporte ao GCC OpenMP (GOMP)

• dep: libstdc++6 (>= 5.2)

  Biblioteca C++ padrão da GNU v3

• dep: python

  linguagem interativa de alto nível orientada a objetos (versão Python2)

• dep: python-colormap

  ease manipulation of matplotlib colormaps and color codecs (Python 2)

• dep: python-configparser

  backport of the enhanced config parser introduced in Python 3.2

• dep: python-matplotlib

  Python based plotting system in a style similar to Matlab

• dep: python-networkx

  tool to create, manipulate and study complex networks

• dep: python-numpy

  Python numérico adiciona uma funcionalidade de array rápida na linguagem Python

• dep: python-pbcore

  Python 2 library for processing PacBio data files

• dep: python-ujson

  ultra fast JSON encoder and decoder for Python 2

• dep: zlib1g (>= 1:1.1.4)

  biblioteca de compressão - runtime (tempo de execução)

Download hinge

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	421.7 kB	2,790.0 kB	[list of files]
arm64	384.3 kB	2,646.0 kB	[list of files]