Package: hinge (0.5.0-4)

[ Source: hinge  ]

long read genome assembler based on hinging

HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.

Other Packages Related to hinge

• dep: daligner

  local alignment discovery between long nucleotide sequencing reads

• dep: dascrubber

  alignment-based scrubbing pipeline for DNA sequencing reads

• dep: dazzdb

  manage nucleotide sequencing read data

• dep: libc6 (>= 2.27)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc1 (>= 1:3.0) [amd64]

  GCC support library

  dep: libgcc1 (>= 1:4.5) [arm64]

• dep: libgomp1 (>= 4.2.1)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: python-colormap

  ease manipulation of matplotlib colormaps and color codecs (Python 2)

• dep: python-configparser

  backport of the enhanced config parser introduced in Python 3.2

• dep: python-matplotlib

  Python based plotting system in a style similar to Matlab

• dep: python-networkx

  tool to create, manipulate and study complex networks

• dep: python-numpy

  Numerical Python adds a fast array facility to the Python language

• dep: python-pbcore

  Python 2 library for processing PacBio data files

• dep: python-ujson

  ultra fast JSON encoder and decoder for Python 2

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Download hinge

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	421.7 kB	2,790.0 kB	[list of files]
arm64	384.3 kB	2,646.0 kB	[list of files]