Pacote: hinge (0.5.0-7 e outros)

[ Fonte: hinge  ]

long read genome assembler based on hinging

HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.

Outros pacotes relacionados a hinge

• dep: daligner

  descoberta de alinhamento local entre longas leituras de sequenciamento de nucleotídeos

• dep: dascrubber

  alignment-based scrubbing pipeline for DNA sequencing reads

• dep: dazzdb

  manage nucleotide sequencing read data

• dep: libc6 (>= 2.34)

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

• dep: libfmt9 (>= 9.0.0+ds1)

  fast type-safe C++ formatting library -- library

• dep: libgcc-s1 (>= 3.0) [amd64, ppc64el]

  Biblioteca de suporte GCC

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgomp1 (>= 4.2.1)

  biblioteca de suporte ao GCC OpenMP (GOMP)

• dep: libstdc++6 (>= 11)

  Biblioteca C++ padrão da GNU v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-colormap

  ease manipulation of matplotlib colormaps and color codecs (Python 3)

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab (Python 3)

• dep: python3-networkx

  tool to create, manipulate and study complex networks (Python3)

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-pbcore

  Python 3 library for processing PacBio data files

• dep: python3-ujson

  ultra fast JSON encoder and decoder for Python 3

• dep: zlib1g (>= 1:1.1.4)

  biblioteca de compressão - runtime (tempo de execução)

Download de hinge

Baixe para todas as arquiteturas disponíveis

Arquitetura	Versão	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	0.5.0-7+b1	493.9 kB	3,312.0 kB	[lista de arquivos]
arm64	0.5.0-7+b1	444.1 kB	3,316.0 kB	[lista de arquivos]
armel	0.5.0-7+b1	423.0 kB	3,183.0 kB	[lista de arquivos]
armhf	0.5.0-7+b1	426.0 kB	2,543.0 kB	[lista de arquivos]
i386	0.5.0-7+b1	494.7 kB	3,511.0 kB	[lista de arquivos]
mips64el	0.5.0-7+b1	433.9 kB	3,827.0 kB	[lista de arquivos]
mipsel	0.5.0-7+b1	436.6 kB	3,681.0 kB	[lista de arquivos]
ppc64el	0.5.0-7+b1	475.4 kB	4,212.0 kB	[lista de arquivos]