Pakket: skewer (0.2.2-6 en anderen)

[ Bron: skewer  ]

post-processing of high-throughput DNA sequence reads

skewer implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences.

Features

 * Detection and removal of adapter sequences
 * Insertion and deletion allowed in pattern matching
 * Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads
 * Demultiplexing of barcoded sequencing runs
 * Multi-threading support
 * Trimming based on phred quality scores
 * IUPAC characters for barcodes and adapters
 * Compressed input and output support

Andere aan skewer gerelateerde pakketten

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, i386]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

skewer downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	0.2.2-6+b1	86,4 kB	216,0 kB	[overzicht]
arm64	0.2.2-6+b1	76,4 kB	235,0 kB	[overzicht]
armel	0.2.2-6+b1	75,2 kB	235,0 kB	[overzicht]
armhf	0.2.2-6+b1	75,5 kB	171,0 kB	[overzicht]
i386	0.2.2-6+b1	90,2 kB	231,0 kB	[overzicht]
mips64el	0.2.2-6+b1	81,5 kB	242,0 kB	[overzicht]
ppc64el	0.2.2-6+b1	84,9 kB	236,0 kB	[overzicht]
s390x	0.2.2-6+b1	76,0 kB	199,0 kB	[overzicht]