Pakket: flye (2.9.4+dfsg-1)

[ Bron: flye  ]

de novo assembler for single molecule sequencing reads using repeat graphs

Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.

Andere aan flye gerelateerde pakketten

• dep: libc6 (>= 2.38)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet riscv64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [riscv64]

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: minimap2

  versatile pairwise aligner for genomic and spliced nucleotide sequences

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-six

  Python 2 and 3 compatibility library

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

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Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	22.637,6 kB	36.914,0 kB	[overzicht]
arm64	22.558,7 kB	36.729,0 kB	[overzicht]
mips64el	22.557,9 kB	37.104,0 kB	[overzicht]
ppc64el	22.638,1 kB	37.177,0 kB	[overzicht]
riscv64	22.616,0 kB	36.509,0 kB	[overzicht]
s390x	22.668,1 kB	37.097,0 kB	[overzicht]