[ 原始碼： flye ]
套件：flye（2.9.5+dfsg-1）
de novo assembler for single molecule sequencing reads using repeat graphs
Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.
其他與 flye 有關的套件
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- dep: libc6 (>= 2.38)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [除 riscv64]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.4) [riscv64]
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- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
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- dep: minimap2
- versatile pairwise aligner for genomic and spliced nucleotide sequences
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-six
- Python 2 and 3 compatibility library
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)