Pakket: ragout (2.3-5 en anderen)

[ Bron: ragout  ]

Reference-Assisted Genome Ordering UTility

Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).

The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.

Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.

Andere aan ragout gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, arm64, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.38) [arm64]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libstdc++6 (>= 13.1) [niet arm64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [arm64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-networkx

  tool to create, manipulate and study complex networks (Python3)

• dep: python3-six

  Python 2 and 3 compatibility library

• rec: sibelia

  comparative genomics tool

ragout downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.3-5	2.068,7 kB	9.728,0 kB	[overzicht]
amd64	2.3-5	2.072,9 kB	9.659,0 kB	[overzicht]
arm64	2.3-5+b1	2.064,1 kB	9.664,0 kB	[overzicht]
armel	2.3-5	2.063,8 kB	9.629,0 kB	[overzicht]
armhf	2.3-5	2.066,9 kB	9.585,0 kB	[overzicht]
hppa (unofficial port)	2.3-5	2.076,1 kB	9.640,0 kB	[overzicht]
i386	2.3-5	2.085,3 kB	9.673,0 kB	[overzicht]
ia64 (unofficial port)	2.3-5	2.090,9 kB	9.805,0 kB	[overzicht]
m68k (unofficial port)	2.3-5	2.074,2 kB	9.645,0 kB	[overzicht]
mips64el	2.3-5	2.072,5 kB	9.801,0 kB	[overzicht]
ppc64 (unofficial port)	2.3-5	2.078,8 kB	9.791,0 kB	[overzicht]
ppc64el	2.3-5	2.077,4 kB	9.791,0 kB	[overzicht]
riscv64	2.3-5	2.072,2 kB	9.607,0 kB	[overzicht]
s390x	2.3-5	2.075,7 kB	9.683,0 kB	[overzicht]
sh4 (unofficial port)	2.3-5	2.086,8 kB	9.661,0 kB	[overzicht]
sparc64 (unofficial port)	2.3-5	2.064,6 kB	11.523,0 kB	[overzicht]
x32 (unofficial port)	2.3-5	2.072,7 kB	9.641,0 kB	[overzicht]