Pakket: ragout (2.3-4)

[ Bron: ragout  ]

Reference-Assisted Genome Ordering UTility

Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).

The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.

Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.

Andere aan ragout gerelateerde pakketten

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, i386, mipsel]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-networkx

  tool to create, manipulate and study complex networks (Python3)

• rec: sibelia

  comparative genomics tool

ragout downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.079,3 kB	9.683,0 kB	[overzicht]
arm64	2.069,5 kB	9.695,0 kB	[overzicht]
armel	2.069,2 kB	9.693,0 kB	[overzicht]
armhf	2.071,5 kB	9.693,0 kB	[overzicht]
i386	2.089,6 kB	9.701,0 kB	[overzicht]
mips64el	2.078,9 kB	9.833,0 kB	[overzicht]
mipsel	2.082,0 kB	9.830,0 kB	[overzicht]
ppc64el	2.083,7 kB	9.823,0 kB	[overzicht]
s390x	2.071,7 kB	9.691,0 kB	[overzicht]