Pakket: mmseqs2 (15-6f452+ds-2 en anderen)

[ Bron: mmseqs2  ]

ultra fast and sensitive protein search and clustering

MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge proteins/nucleotide sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it achieves almost the same sensitivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed.

Andere aan mmseqs2 gerelateerde pakketten

• dep: libatomic1 (>= 4.8) [niet ppc64, ppc64el, sparc64, x32]

  support library providing __atomic built-in functions

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.29) [hppa, m68k, ppc64, sparc64, x32]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.31) [sh4]

  dep: libc6 (>= 2.38) [amd64, arm64, mips64el, ppc64el, riscv64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [arm64, ppc64, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, amd64, mips64el, sh4]

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 4.2) [ia64]

  dep: libgcc-s1 (>= 4.3) [riscv64, sparc64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libgzstream0 (>= 1.5+dfsg)

  provide functionality of zlib C-library in a C++ iostream

• dep: libstdc++6 (>= 13.1) [amd64, arm64, ia64, mips64el, ppc64el, riscv64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [niet amd64, arm64, ia64, mips64el, ppc64el, riscv64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: libzstd1 (>= 1.3.8) [alpha, hppa, m68k, ppc64, sparc64]

  fast lossless compression algorithm

  dep: libzstd1 (>= 1.4.0) [sh4, x32]

• dep: zlib1g (>= 1:1.1.4) [niet amd64, arm64, ia64, mips64el, ppc64el, riscv64]

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  dep: zlib1g (>= 1:1.2.6) [amd64, arm64, ia64, mips64el, ppc64el, riscv64]

mmseqs2 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	12-113e3+ds-3+b1	4.605,9 kB	9.018,0 kB	[overzicht]
amd64	15-6f452+ds-2+b1	23.684,5 kB	71.122,0 kB	[overzicht]
arm64	15-6f452+ds-2+b1	6.968,4 kB	15.864,0 kB	[overzicht]
hppa (unofficial port)	12-113e3+ds-2+b1	4.494,2 kB	7.857,0 kB	[overzicht]
ia64 (unofficial port)	15-6f452+ds-2	7.602,6 kB	23.212,0 kB	[overzicht]
m68k (unofficial port)	12-113e3+ds-2+b1	4.368,5 kB	7.775,0 kB	[overzicht]
mips64el	15-6f452+ds-2+b1	6.933,1 kB	16.790,0 kB	[overzicht]
ppc64 (unofficial port)	12-113e3+ds-2+b1	4.402,7 kB	8.061,0 kB	[overzicht]
ppc64el	15-6f452+ds-2+b1	7.193,5 kB	17.208,0 kB	[overzicht]
riscv64	15-6f452+ds-2+b2	7.321,3 kB	15.548,0 kB	[overzicht]
sh4 (unofficial port)	12-113e3+ds-3+b1	4.800,2 kB	7.324,0 kB	[overzicht]
sparc64 (unofficial port)	11-e1a1c+ds-4	4.158,7 kB	7.066,0 kB	[overzicht]
x32 (unofficial port)	12-113e3+ds-3+b1	4.529,1 kB	7.777,0 kB	[overzicht]