Package: mmseqs2 (15-6f452+ds-2 and others)

[ Source: mmseqs2  ]

ultra fast and sensitive protein search and clustering

MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge proteins/nucleotide sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it achieves almost the same sensitivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed.

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Download mmseqs2

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	12-113e3+ds-3+b1	4,605.9 kB	9,018.0 kB	[list of files]
amd64	15-6f452+ds-2+b1	23,684.5 kB	71,122.0 kB	[list of files]
arm64	15-6f452+ds-2+b1	6,968.4 kB	15,864.0 kB	[list of files]
hppa (unofficial port)	12-113e3+ds-2+b1	4,494.2 kB	7,857.0 kB	[list of files]
ia64 (unofficial port)	15-6f452+ds-2	7,602.6 kB	23,212.0 kB	[list of files]
m68k (unofficial port)	12-113e3+ds-2+b1	4,368.5 kB	7,775.0 kB	[list of files]
mips64el	15-6f452+ds-2+b1	6,933.1 kB	16,790.0 kB	[list of files]
ppc64 (unofficial port)	12-113e3+ds-2+b1	4,402.7 kB	8,061.0 kB	[list of files]
ppc64el	15-6f452+ds-2+b1	7,193.5 kB	17,208.0 kB	[list of files]
riscv64	15-6f452+ds-2+b2	7,321.3 kB	15,548.0 kB	[list of files]
sh4 (unofficial port)	12-113e3+ds-3+b1	4,800.2 kB	7,324.0 kB	[list of files]
sparc64 (unofficial port)	11-e1a1c+ds-4	4,158.7 kB	7,066.0 kB	[list of files]
x32 (unofficial port)	12-113e3+ds-3+b1	4,529.1 kB	7,777.0 kB	[list of files]