Pakket: biobambam2 (2.0.185+ds-2)

[ Bron: biobambam2  ]

tools for early stage alignment file processing

This package contains some tools for processing BAM files, including

  bamsormadup:  parallel sorting and duplicate marking
  bamcollate2:  reads BAM and writes BAM reordered such that alignment
                or collated by query name
  bammarkduplicates: reads BAM and writes BAM with duplicate alignments
                marked using the BAM flags field
  bammaskflags: reads BAM and writes BAM while masking (removing) bits
                from the flags column
  bamrecompress: reads BAM and writes BAM with a defined compression
                 setting. This tool is capable of multi-threading.
  bamsort:       reads BAM and writes BAM resorted by coordinates or
                 query name
  bamtofastq:    reads BAM and writes FastQ; output can be collated
                 or uncollated by query name

Andere aan biobambam2 gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [ppc64el]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [niet i386, ia64, ppc64el]

  dep: libgcc-s1 (>= 4.2) [ia64]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libmaus2-2 (>= 2.0.813+ds)

  collection of data structures and algorithms for biobambam

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

biobambam2 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	9.150,3 kB	73.920,0 kB	[overzicht]
amd64	9.203,8 kB	64.327,0 kB	[overzicht]
i386	9.933,6 kB	71.707,0 kB	[overzicht]
ia64 (unofficial port)	10.230,3 kB	117.346,0 kB	[overzicht]
mips64el	7.602,0 kB	75.740,0 kB	[overzicht]
ppc64el	8.944,3 kB	76.579,0 kB	[overzicht]
riscv64	8.815,6 kB	51.675,0 kB	[overzicht]
x32 (unofficial port)	9.225,9 kB	60.999,0 kB	[overzicht]