Package: vcfanno (0.3.2+ds-2 and others)

[ Source: vcfanno  ]

annotate a VCF with other VCFs/BEDs/tabixed files

Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.

  * For VCF, values are pulled by name from the INFO field with special
    cases of ID and FILTER to pull from those VCF columns.
  * For BED, values are pulled from (1-based) column number.
  * For BAM, depth (count), "mapq" and "seq" are currently supported.

Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.

Other Packages Related to vcfanno

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.3.6-6~) [i386]

  dep: libc6 (>= 2.4) [not arm64, i386, ppc64el]

Download vcfanno

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	0.3.2+ds-2+b6	2,103.4 kB	6,786.0 kB	[list of files]
arm64	0.3.2+ds-2+b6	1,785.3 kB	6,321.0 kB	[list of files]
armel	0.3.2+ds-2+b6	1,821.7 kB	5,766.0 kB	[list of files]
armhf	0.3.2+ds-2+b6	1,814.7 kB	5,766.0 kB	[list of files]
i386	0.3.2+ds-2+b6	1,980.7 kB	5,764.0 kB	[list of files]
mips64el	0.3.2+ds-2+b6	1,671.5 kB	6,915.0 kB	[list of files]
mipsel	0.3.2+ds-2+b6	1,695.4 kB	6,442.0 kB	[list of files]
ppc64el	0.3.2+ds-2+b6	1,746.0 kB	6,321.0 kB	[list of files]
s390x	0.3.2+ds-2+b6	1,922.7 kB	6,708.0 kB	[list of files]