Pakket: jellyfish (2.3.0-15 en anderen)

[ Bron: jellyfish  ]

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

Andere aan jellyfish gerelateerde pakketten

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, i386]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libjellyfish-2.0-2 (= 2.3.0-15+b3)

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

jellyfish downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.3.0-15+b3	770,4 kB	2.475,0 kB	[overzicht]
arm64	2.3.0-15+b3	688,6 kB	2.379,0 kB	[overzicht]
armel	2.3.0-15+b3	636,7 kB	1.849,0 kB	[overzicht]
armhf	2.3.0-15+b3	661,8 kB	1.433,0 kB	[overzicht]
i386	2.3.0-15+b3	754,7 kB	2.261,0 kB	[overzicht]
mips64el	2.3.0-15+b3	650,1 kB	3.144,0 kB	[overzicht]
ppc64el	2.3.0-15+b3	734,9 kB	2.955,0 kB	[overzicht]