Package: concavity (0.1+dfsg.1-6)

[ Source: concavity  ]

predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

Other Packages Related to concavity

• dep: libc6 (>= 2.38)

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

• sug: conservation-code

  protein sequence conservation scoring tool

• sug: pymol

  Package not available

Download concavity

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	238.3 kB	967.0 kB	[list of files]
arm64	229.2 kB	1,000.0 kB	[list of files]
armel	223.8 kB	939.0 kB	[list of files]
armhf	216.8 kB	815.0 kB	[list of files]
i386	249.8 kB	1,006.0 kB	[list of files]
mips64el	254.4 kB	1,179.0 kB	[list of files]
ppc64el	251.4 kB	1,128.0 kB	[list of files]
riscv64	243.8 kB	883.0 kB	[list of files]
s390x	240.8 kB	979.0 kB	[list of files]