Paketti: r-bioc-dropletutils (1.24.0+ds-2 ja muut)

[ Source: r-bioc-dropletutils  ]

BioConductor utilities for handling single-cell droplet data

Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading from count matrices or molecule information files, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.

Muut pakettiin r-bioc-dropletutils liittyvät paketit

• dep: libc6 (>= 2.27) [riscv64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.29) [ei alpha, ia64, riscv64, sh4]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [ei alpha, hppa, ia64, riscv64, sh4, sparc64]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 4.2) [ia64, sh4]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC:n apukirjasto

• dep: libhdf5-103-1 [x32]

  HDF5 C runtime files - serial version

• dep: libhdf5-103-1t64 [ei x32]

  HDF5 C runtime files - serial version

• dep: libhdf5-cpp-103-1 (>= 1.10.5) [x32]

  HDF5 - C++ runtime files - serial version

• dep: libhdf5-cpp-103-1t64 (>= 1.10.5) [ei x32]

  HDF5 - C++ runtime files - serial version

• dep: libstdc++6 (>= 11) [x32]

  GNU standardi C++ -kirjasto, versio 3

  dep: libstdc++6 (>= 13.1) [hppa, ia64, sh4]

  dep: libstdc++6 (>= 14) [ei hppa, ia64, sh4, x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-api-bioc-3.16 [x32]

  Paketti ei saatavilla

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Paketti ei saatavilla

• dep: r-api-bioc-3.19 [ei hppa, ia64, sh4, x32]

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-bioc-beachmat [hppa, ia64, sh4, x32]

  I/O for several formats storing matrix data

  dep: r-bioc-beachmat (>= 2.20.0) [ei hppa, ia64, sh4, x32]

• dep: r-bioc-biocgenerics [hppa, ia64, sh4, x32]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.50.0) [ei hppa, ia64, sh4, x32]

• dep: r-bioc-biocparallel [hppa, ia64, sh4, x32]

  BioConductor facilities for parallel evaluation

  dep: r-bioc-biocparallel (>= 1.38.0) [ei hppa, ia64, sh4, x32]

• dep: r-bioc-delayedarray [hppa, ia64, sh4, x32]

  BioConductor delayed operations on array-like objects

  dep: r-bioc-delayedarray (>= 0.30.1) [ei hppa, ia64, sh4, x32]

• dep: r-bioc-delayedmatrixstats [hppa, ia64, sh4, x32]

  Functions on Rows and Columns of 'DelayedMatrix' Objects

  dep: r-bioc-delayedmatrixstats (>= 1.26.0) [ei hppa, ia64, sh4, x32]

• dep: r-bioc-edger [hppa, ia64, sh4, x32]

  Empirical analysis of digital gene expression data in R

  dep: r-bioc-edger (>= 4.2.1) [ei hppa, ia64, sh4, x32]

• dep: r-bioc-genomicranges [hppa, ia64, sh4, x32]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.56.1) [ei hppa, ia64, sh4, x32]

• dep: r-bioc-hdf5array [hppa, ia64, sh4, x32]

  HDF5 backend for DelayedArray objects

  dep: r-bioc-hdf5array (>= 1.32.0) [ei hppa, ia64, sh4, x32]

• dep: r-bioc-iranges [hppa, ia64, sh4, x32]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.38.1) [ei hppa, ia64, sh4, x32]

• dep: r-bioc-rhdf5 [hppa, ia64, sh4, x32]

  BioConductor HDF5 interface to R

  dep: r-bioc-rhdf5 (>= 2.48.0) [ei hppa, ia64, sh4, x32]

• dep: r-bioc-rhdf5lib [hppa, ia64, sh4, x32]

  GNU R hdf5 library

  dep: r-bioc-rhdf5lib (>= 1.26.0) [ei hppa, ia64, sh4, x32]

• dep: r-bioc-s4vectors [hppa, ia64, sh4, x32]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.42.1) [ei hppa, ia64, sh4, x32]

• dep: r-bioc-scuttle [hppa, ia64, sh4, x32]

  BioConductor single-cell RNA-Seq analysis utilities

  dep: r-bioc-scuttle (>= 1.14.0) [ei hppa, ia64, sh4, x32]

• dep: r-bioc-singlecellexperiment [hppa, ia64, sh4, x32]

  S4 Classes for Single Cell Data

  dep: r-bioc-singlecellexperiment (>= 1.26.0) [ei hppa, ia64, sh4, x32]

• dep: r-bioc-summarizedexperiment [hppa, ia64, sh4, x32]

  BioConductor assay container

  dep: r-bioc-summarizedexperiment (>= 1.34.0) [ei hppa, ia64, sh4, x32]

• dep: r-cran-bh

  (Virtual) GNU R package to provide BH

• dep: r-cran-dqrng

  GNU R fast pseudo random number generators

• dep: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-r.utils

  GNU R various programming utilities

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]

  standard styles for vignettes and other Bioconductor documents

  sug: r-bioc-biocstyle (>= 2.32.1) [ei hppa, ia64, sh4, x32]

• sug: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

Imuroi r-bioc-dropletutils

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	1.24.0+ds-2	393.1 kt	833.0 kt	[tiedostoluettelo]
amd64	1.24.0+ds-2	401.3 kt	765.0 kt	[tiedostoluettelo]
arm64	1.24.0+ds-2	383.7 kt	769.0 kt	[tiedostoluettelo]
hppa (epävirallinen siirros)	1.22.0+ds-1+b1	384.2 kt	775.0 kt	[tiedostoluettelo]
ia64 (epävirallinen siirros)	1.22.0+ds-1+b1	404.7 kt	1,078.0 kt	[tiedostoluettelo]
mips64el	1.24.0+ds-2	379.6 kt	859.0 kt	[tiedostoluettelo]
ppc64 (epävirallinen siirros)	1.24.0+ds-2	401.3 kt	901.0 kt	[tiedostoluettelo]
ppc64el	1.24.0+ds-2	400.5 kt	897.0 kt	[tiedostoluettelo]
riscv64	1.24.0+ds-2	400.2 kt	688.0 kt	[tiedostoluettelo]
s390x	1.24.0+ds-2	401.7 kt	785.0 kt	[tiedostoluettelo]
sh4 (epävirallinen siirros)	1.22.0+ds-1+b1	400.3 kt	760.0 kt	[tiedostoluettelo]
sparc64 (epävirallinen siirros)	1.24.0+ds-2	374.6 kt	1,416.0 kt	[tiedostoluettelo]
x32 (epävirallinen siirros)	1.18.1+ds-1	380.4 kt	693.0 kt	[tiedostoluettelo]