Paketti: libseqlib-dev (1.2.0+dfsg-11 ja muut)

[ Source: libseqlib  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

This package contains the header files and static library.

Tagit: Software Development: Kirjastot, Role: Development Library

Muut pakettiin libseqlib-dev liittyvät paketit

• dep: libbwa-dev

  Burrows-Wheeler Aligner source files

• dep: libbz2-dev [sparc64]

  high-quality block-sorting file compressor library - development

• dep: libfml-dev

  development headers for libfml

• dep: libhts-dev

  development files for the HTSlib

• dep: libjsoncpp-dev

  library for reading and writing JSON for C++ (devel files)

• dep: liblzma-dev [sparc64]

  XZ-format compression library - development files

• dep: libseqlib2 (= 1.2.0+dfsg-11+b1) [ia64]

  C++ htslib/bwa-mem/fermi interface for interrogating sequence data

  dep: libseqlib2 (= 1.2.0+dfsg-11+b2) [ei ia64]

• dep: libssw-dev

  Development headers and static libraries for libssw
  myös näennäispaketti, jonka toteuttaa libssw-dev

• dep: libunwind8-dev [ia64]

  näennäispaketti, jonka toteuttaa libunwind-dev

• dep: zlib1g-dev

  compression library - development

Imuroi libseqlib-dev

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	1.2.0+dfsg-11+b2	231.2 kt	1,610.0 kt	[tiedostoluettelo]
amd64	1.2.0+dfsg-11+b2	216.1 kt	1,186.0 kt	[tiedostoluettelo]
arm64	1.2.0+dfsg-11+b2	203.5 kt	1,191.0 kt	[tiedostoluettelo]
armel	1.2.0+dfsg-11+b2	204.5 kt	1,077.0 kt	[tiedostoluettelo]
armhf	1.2.0+dfsg-11+b2	206.3 kt	970.0 kt	[tiedostoluettelo]
i386	1.2.0+dfsg-11+b2	230.5 kt	1,017.0 kt	[tiedostoluettelo]
ia64 (epävirallinen siirros)	1.2.0+dfsg-11+b1	264.6 kt	1,753.0 kt	[tiedostoluettelo]
m68k (epävirallinen siirros)	1.2.0+dfsg-11+b2	201.1 kt	988.0 kt	[tiedostoluettelo]
mips64el	1.2.0+dfsg-11+b2	223.9 kt	1,393.0 kt	[tiedostoluettelo]
ppc64 (epävirallinen siirros)	1.2.0+dfsg-11+b2	218.1 kt	1,286.0 kt	[tiedostoluettelo]
ppc64el	1.2.0+dfsg-11+b2	224.6 kt	1,273.0 kt	[tiedostoluettelo]
riscv64	1.2.0+dfsg-11+b2	676.7 kt	6,552.0 kt	[tiedostoluettelo]
s390x	1.2.0+dfsg-11+b2	210.7 kt	1,180.0 kt	[tiedostoluettelo]
sh4 (epävirallinen siirros)	1.2.0+dfsg-11+b2	238.4 kt	950.0 kt	[tiedostoluettelo]
sparc64 (epävirallinen siirros)	1.2.0+dfsg-11+b2	187.1 kt	1,166.0 kt	[tiedostoluettelo]
x32 (epävirallinen siirros)	1.2.0+dfsg-11+b2	215.7 kt	995.0 kt	[tiedostoluettelo]