Paketti: ncbi-blast+ (2.12.0+ds-3 ja muut)

[ Source: ncbi-blast+  ]

next generation suite of BLAST sequence search tools

The Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide queries or databases in all six frames and compare to protein databases or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. It is also possible to compare a protein or nucleotide query to a database of PSSM’s. The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service.

Tagit: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Purpose: use::analysing, works-with::biological-sequence

Muut pakettiin ncbi-blast+ liittyvät paketit

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.33)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 3.0) [s390x]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.4) [amd64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: liblmdb0 (>= 0.9.7)

  Lightning Memory-Mapped Database shared library

• dep: libmbedcrypto7 (>= 2.28.0)

  lightweight crypto and SSL/TLS library - crypto library

• dep: libmbedtls14 (>= 2.28.0)

  lightweight crypto and SSL/TLS library - tls library

• dep: libpcre3

  Old Perl 5 Compatible Regular Expression Library - runtime files

• dep: libstdc++6 (>= 11)

  GNU standardi C++ -kirjasto, versio 3

• dep: ncbi-data

  Platform-independent data for the NCBI toolkit

• dep: perl

  Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.2.11.dfsg)

  pakkauskirjaston ajonaikaistiedostot

• enh: t-coffee

  Multiple Sequence Alignment

Imuroi ncbi-blast+

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	2.12.0+ds-3+b1	11,644.2 kt	50,560.0 kt	[tiedostoluettelo]
arm64	2.12.0+ds-3+b1	10,667.5 kt	49,066.0 kt	[tiedostoluettelo]
armel	2.12.0+ds-3+b1	9,767.0 kt	41,076.0 kt	[tiedostoluettelo]
armhf	2.12.0+ds-3+b1	10,020.6 kt	33,972.0 kt	[tiedostoluettelo]
i386	2.12.0+ds-3+b1	12,566.7 kt	49,759.0 kt	[tiedostoluettelo]
mips64el	2.12.0+ds-3+b1	8,641.6 kt	56,123.0 kt	[tiedostoluettelo]
mipsel	2.12.0+ds-3+b1	8,748.4 kt	55,228.0 kt	[tiedostoluettelo]
ppc64el	2.12.0+ds-3+b1	11,749.7 kt	61,741.0 kt	[tiedostoluettelo]
s390x	2.12.0+ds-3+b1	10,451.1 kt	50,676.0 kt	[tiedostoluettelo]