Paketti: minimap2 (2.24+dfsg-3 ja muut)

[ Source: minimap2  ]

versatile pairwise aligner for genomic and spliced nucleotide sequences

Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.

For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.

Muut pakettiin minimap2 liittyvät paketit

• dep: libc6 (>= 2.34)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: zlib1g (>= 1:1.1.4)

  pakkauskirjaston ajonaikaistiedostot

Imuroi minimap2

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	2.24+dfsg-3+b1	377.2 kt	498.0 kt	[tiedostoluettelo]
arm64	2.24+dfsg-3+b1	369.0 kt	510.0 kt	[tiedostoluettelo]
armel	2.24+dfsg-3+b1	386.7 kt	545.0 kt	[tiedostoluettelo]
armhf	2.24+dfsg-3+b1	388.1 kt	477.0 kt	[tiedostoluettelo]
i386	2.24+dfsg-3+b1	384.2 kt	525.0 kt	[tiedostoluettelo]
mips64el	2.24+dfsg-3+b1	402.3 kt	582.0 kt	[tiedostoluettelo]
mipsel	2.24+dfsg-3+b1	412.6 kt	645.0 kt	[tiedostoluettelo]
ppc64el	2.24+dfsg-3+b1	389.0 kt	574.0 kt	[tiedostoluettelo]
s390x	2.24+dfsg-3+b1	389.4 kt	567.0 kt	[tiedostoluettelo]