Package: pbbamtools (2.4.0+dfsg-1 and others)

[ Source: pbbam  ]

processing Pacific Biosciences binary alignment/map files

The BAM format is a binary, compressed, record-oriented container format for raw or aligned sequence reads. The associated SAM format is a text representation of the same data. The specifications for BAM/SAM are maintained by the SAM/BAM Format Specification Working Group.

PacBio-produced BAM files are fully compatible with the BAM specification, but makes use of the extensibility mechanisms of the BAM specification to encode PacBio-specific information.

This package provides command-line utilities for working with PacBio BAM files.

Other Packages Related to pbbamtools

• dep: libc6 (>= 2.31) [sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.34) [not alpha, ia64, m68k, sh4]

  dep: libc6 (>= 2.4) [m68k]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [not ia64, m68k, sh4]

  GCC support library

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libhts3 (>= 1.10) [m68k, sh4]

  C library for high-throughput sequencing data formats

• dep: libhts3t64 (>= 1.17) [not m68k, sh4]

  C library for high-throughput sequencing data formats

• dep: libpbbam1.3.0 (= 1.3.0+dfsg-2) [m68k, sh4]

  Pacific Biosciences binary alignment/map (BAM) library

• dep: libpbbam2.4.0 (= 2.4.0+dfsg-1+b3) [ia64]

  Pacific Biosciences binary alignment/map (BAM) library

  dep: libpbbam2.4.0 (= 2.4.0+dfsg-1+b4) [not ia64, m68k, sh4]

• dep: libpbcopper1.3.0 (>= 1.4.0+dfsg) [m68k, sh4]

  data structures, algorithms, and utilities for C++ applications

• dep: libpbcopper2.3.0 (>= 2.3.0+dfsg) [not m68k, sh4]

  data structures, algorithms, and utilities for C++ applications

• dep: libstdc++6 (>= 13.1) [not m68k, sh4]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [m68k, sh4]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• rec: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

Download pbbamtools

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.4.0+dfsg-1+b4	122.5 kB	686.0 kB	[list of files]
amd64	2.4.0+dfsg-1+b4	133.8 kB	479.0 kB	[list of files]
arm64	2.4.0+dfsg-1+b4	116.9 kB	619.0 kB	[list of files]
ia64 (unofficial port)	2.4.0+dfsg-1+b3	145.0 kB	712.0 kB	[list of files]
m68k (unofficial port)	1.3.0+dfsg-2	79.1 kB	274.0 kB	[list of files]
mips64el	2.4.0+dfsg-1+b4	120.7 kB	702.0 kB	[list of files]
ppc64el	2.4.0+dfsg-1+b4	127.2 kB	683.0 kB	[list of files]
riscv64	2.4.0+dfsg-1+b4	123.5 kB	363.0 kB	[list of files]
sh4 (unofficial port)	1.3.0+dfsg-2	88.0 kB	256.0 kB	[list of files]