Package: mummer (3.23+dfsg-8 and others)

[ Source: mummer  ]

Efficient sequence alignment of full genomes

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::TODO, Supports Format: Plain Text, Works with: Need an extra tag

Other Packages Related to mummer

• dep: gawk

  GNU awk, a pattern scanning and processing language

• dep: libc6 (>= 2.34) [not alpha, arm64, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.36) [sh4]

  dep: libc6 (>= 2.38) [arm64]

• dep: libc6.1 (>= 2.33) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.36) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 11) [not arm64, riscv64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [arm64, riscv64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: perl

  Larry Wall's Practical Extraction and Report Language

Download mummer

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	3.23+dfsg-8	654.6 kB	3,963.0 kB	[list of files]
amd64	3.23+dfsg-8	646.2 kB	3,307.0 kB	[list of files]
arm64	3.23+dfsg-8+b1	628.2 kB	3,827.0 kB	[list of files]
armel	3.23+dfsg-8	616.5 kB	3,745.0 kB	[list of files]
armhf	3.23+dfsg-8	612.8 kB	3,361.0 kB	[list of files]
hppa (unofficial port)	3.23+dfsg-8	643.0 kB	3,175.0 kB	[list of files]
i386	3.23+dfsg-8	653.4 kB	3,297.0 kB	[list of files]
ia64 (unofficial port)	3.23+dfsg-8	702.7 kB	4,138.0 kB	[list of files]
m68k (unofficial port)	3.23+dfsg-8	633.3 kB	3,193.0 kB	[list of files]
mips64el	3.23+dfsg-8	651.6 kB	4,009.0 kB	[list of files]
ppc64 (unofficial port)	3.23+dfsg-8	651.1 kB	4,083.0 kB	[list of files]
ppc64el	3.23+dfsg-8	655.8 kB	4,019.0 kB	[list of files]
riscv64	3.23+dfsg-8+b1	648.4 kB	3,067.0 kB	[list of files]
s390x	3.23+dfsg-8	622.6 kB	3,286.0 kB	[list of files]
sh4 (unofficial port)	3.23+dfsg-8	655.9 kB	3,748.0 kB	[list of files]
sparc64 (unofficial port)	3.23+dfsg-8	621.6 kB	20,626.0 kB	[list of files]
x32 (unofficial port)	3.23+dfsg-8	643.1 kB	3,173.0 kB	[list of files]