Package: blasr (5.3.5+dfsg-7 and others)

[ Source: blasr  ]

mapping single-molecule sequencing reads

Basic local alignment with successive refinement (BLASR) is a method for mapping single-molecule sequencing reads against a reference genome. Such reads are thousands of bases long, with divergence between them and the genome being dominated by insertion and deletion error.

Other Packages Related to blasr

• dep: libblasr [x32]

  tools for aligning PacBio reads to target sequences

• dep: libblasr5.3.5 (>= 5.3.5+dfsg) [not hppa, m68k, ppc64, sh4, x32]

  tools for aligning PacBio reads to target sequences

• dep: libc6 (>= 2.16) [x32]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [hppa, ppc64]

  dep: libc6 (>= 2.28) [sh4]

  dep: libc6 (>= 2.38) [amd64, arm64, mips64el, ppc64el, riscv64]

  dep: libc6 (>= 2.4) [m68k]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64el]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

• dep: libgcc1 (>= 1:3.0) [x32]

  Package not available

  dep: libgcc1 (>= 1:3.4) [sh4]

• dep: libgcc2 (>= 4.2.1) [m68k]

  Package not available

• dep: libhdf5-10 [hppa, ppc64]

  Package not available

• dep: libhdf5-100 [x32]

  Package not available

• dep: libhdf5-cpp-100 (>= 1.10.0) [x32]

  Package not available

• dep: libhdf5-cpp-103 (>= 1.10.1) [m68k, sh4]

  HDF5 - C++ runtime files - serial version (transitional package)

• dep: libhdf5-cpp-103-1 (>= 1.10.5) [ia64]

  HDF5 - C++ runtime files - serial version

• dep: libhdf5-cpp-11 (>= 1.8.15-patch1) [ppc64]

  Package not available

  dep: libhdf5-cpp-11 (>= 1.8.16) [hppa]

• dep: libhdf5-cpp-310 (>= 1.14.4.3) [alpha, amd64, arm64, mips64el, ppc64el, riscv64]

  HDF5 - C++ runtime files - serial version

• dep: libpbbam0.23.0 (>= 0.23.0+dfsg) [m68k, sh4]

  Package not available

• dep: libpbbam2.4.0 (>= 2.4.0+dfsg) [not hppa, m68k, ppc64, sh4, x32]

  Pacific Biosciences binary alignment/map (BAM) library

• dep: libpbcopper2.3.0 (>= 2.3.0+dfsg) [not hppa, m68k, ppc64, sh4, x32]

  data structures, algorithms, and utilities for C++ applications

• dep: libpbdata [x32]

  tools for handling PacBio sequences

• dep: libpbihdf [x32]

  tools for handling PacBio hdf5 files

• dep: libpbseq [m68k, sh4]

  library for analyzing PacBio sequencing data

  dep: libpbseq (>= 5.3.5+dfsg-4~) [ia64]

  dep: libpbseq (>= 5.3.5+dfsg-9~) [alpha, amd64, arm64, mips64el, ppc64el, riscv64]

• dep: libstdc++6 (>= 13.1) [not hppa, m68k, ppc64, sh4, x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [hppa, m68k, ppc64, sh4, x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.1.4) [hppa, ppc64, x32]

  compression library - runtime

Download blasr

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	5.3.5+dfsg-7+b1	226.4 kB	808.0 kB	[list of files]
amd64	5.3.5+dfsg-7+b1	232.8 kB	700.0 kB	[list of files]
arm64	5.3.5+dfsg-7+b1	201.7 kB	680.0 kB	[list of files]
hppa (unofficial port)	0~20150724+git3ca7fe8-1+b2	1,423.6 kB	6,078.0 kB	[list of files]
ia64 (unofficial port)	5.3.5+dfsg-6+b4	271.0 kB	1,226.0 kB	[list of files]
m68k (unofficial port)	5.3.3+dfsg-1+b1	180.6 kB	591.0 kB	[list of files]
mips64el	5.3.5+dfsg-7+b1	214.9 kB	824.0 kB	[list of files]
ppc64 (unofficial port)	0~20150724+git3ca7fe8-1+b2	1,367.5 kB	6,824.0 kB	[list of files]
ppc64el	5.3.5+dfsg-7+b1	226.1 kB	808.0 kB	[list of files]
riscv64	5.3.5+dfsg-7+b1	226.1 kB	532.0 kB	[list of files]
sh4 (unofficial port)	5.3.3+dfsg-1+b1	223.0 kB	543.0 kB	[list of files]
x32 (unofficial port)	5.3-1+b1	459.5 kB	1,607.0 kB	[list of files]