Package: autodock (4.2.6-9 and others)

[ Source: autodocksuite  ]

analysis of ligand binding to protein structure

AutoDock is a prime representative of the programs addressing the simulation of the docking of fairly small chemical ligands to rather big protein receptors. Earlier versions had all flexibility in the ligands while the protein was kept rather ridgid. This latest version 4 also allows for a flexibility of selected sidechains of surface residues, i.e., takes the rotamers into account.

The AutoDock program performs the docking of the ligand to a set of grids describing the target protein. AutoGrid pre-calculates these grids.

Tags: Field: Biology, Structural Biology, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, works-with-format::TODO, Works with: 3D Model, Need an extra tag

Other Packages Related to autodock

• dep: libc6 (>= 2.29) [not alpha, arm64, ia64, riscv64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.33) [sh4]

  dep: libc6 (>= 2.34) [riscv64]

  dep: libc6 (>= 2.38) [arm64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.33) [ia64]

• dep: libgcc-s1 (>= 3.3.1) [not armel, armhf, hppa, ia64, m68k, ppc64, ppc64el, sh4]

  GCC support library

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• sug: autogrid

  pre-calculate binding of ligands to their receptor

Download autodock

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	4.2.6-9	176.2 kB	460.0 kB	[list of files]
amd64	4.2.6-9	163.5 kB	411.0 kB	[list of files]
arm64	4.2.6-9+b1	162.2 kB	433.0 kB	[list of files]
armel	4.2.6-9	156.7 kB	403.0 kB	[list of files]
armhf	4.2.6-9	151.7 kB	315.0 kB	[list of files]
hppa (unofficial port)	4.2.6-9	169.2 kB	396.0 kB	[list of files]
i386	4.2.6-9	161.5 kB	411.0 kB	[list of files]
ia64 (unofficial port)	4.2.6-9	218.2 kB	788.0 kB	[list of files]
m68k (unofficial port)	4.2.6-9	157.0 kB	455.0 kB	[list of files]
mips64el	4.2.6-9	165.0 kB	460.0 kB	[list of files]
ppc64 (unofficial port)	4.2.6-9	164.6 kB	499.0 kB	[list of files]
ppc64el	4.2.6-9	164.4 kB	435.0 kB	[list of files]
riscv64	4.2.6-9+b1	169.2 kB	373.0 kB	[list of files]
s390x	4.2.6-9	149.3 kB	395.0 kB	[list of files]
sh4 (unofficial port)	4.2.6-9	197.2 kB	388.0 kB	[list of files]
sparc64 (unofficial port)	4.2.6-9	162.7 kB	470.0 kB	[list of files]
x32 (unofficial port)	4.2.6-9	163.3 kB	399.0 kB	[list of files]