Пакет: r-bioc-genomicalignments (1.14.0-1) [debports]

[ Източник:  ]

BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Други пакети, свързани с r-bioc-genomicalignments

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• dep: r-api-3.4

  Пакетът не е наличен

• dep: r-base-core (>= 3.4.3-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biocgenerics (>= 0.15.3)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

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• dep: r-bioc-biostrings (>= 2.37.1)

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• dep: r-bioc-genomeinfodb (>= 1.13.1)

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• dep: r-bioc-genomicranges (>= 1.29.14)

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• dep: r-bioc-iranges (>= 2.11.16)

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• dep: r-bioc-rsamtools (>= 1.21.4)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.13.13)

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• dep: r-bioc-summarizedexperiment (>= 1.5.3)

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• sug: r-bioc-bsgenome

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• sug: r-bioc-edger

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• sug: r-bioc-genomicfeatures

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• sug: r-bioc-rtracklayer

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• sug: r-bioc-shortread

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• sug: r-cran-runit

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