Balík: r-bioc-genomicalignments (1.14.0-1) [debports]

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BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Ostatné balíky súvisiace s balíkom r-bioc-genomicalignments

• dep: libc6 (>= 2.4)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: r-api-3.4

  Balík nie je dostupný

• dep: r-base-core (>= 3.4.3-1)

  jadro GNU R na štatistické výpočty a grafický systém

• dep: r-bioc-biocgenerics (>= 0.15.3)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.37.1)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.13.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.29.14)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.11.16)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 1.21.4)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.13.13)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment (>= 1.5.3)

  BioConductor assay container

• sug: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-shortread

  GNU R classes and methods for high-throughput short-read sequencing data

• sug: r-cran-runit

  GNU R package providing unit testing framework

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Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
m68k (neoficiálny port)	1,648.5 kB	2,183.0 kB	[zoznam súborov]