Пакет: seer (1.1.4-2 и други)

[ Източник: seer  ]

genomic sequence element (kmer) enrichment analysis

Bacterial genomes vary extensively in terms of both gene content and gene sequence - this plasticity hampers the use of traditional SNP-based methods for identifying all genetic associations with phenotypic variation. SEER provides a computationally scalable and widely applicable statistical method for the identification of sequence elements that are significantly enriched in a phenotype of interest. SEER is applicable to even tens of thousands of genomes by counting variable- length k-mers using a distributed string-mining algorithm. Robust options are provided for association analysis that also correct for the clonal population structure of bacteria. Using large collections of genomes of the major human pathogen Streptococcus pneumoniae, SEER identifies relevant previously characterised resistance determinants for several antibiotics.

Други пакети, свързани с seer

• dep: libarmadillo9 (>= 1:9.100.6+dfsg)

  streamlined C++ linear algebra library

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  или libblas.so.3

  виртуален пакет, предлаган от libatlas3-base, libblas3, libblis2-openmp, libblis2-pthread, libblis2-serial, libopenblas-base

• dep: libboost-program-options1.67.0

  program options library for C++

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:3.0) [amd64]

  GCC support library

  dep: libgcc1 (>= 1:3.5) [armhf]

  dep: libgcc1 (>= 1:4.2) [i386]

  dep: libgcc1 (>= 1:4.5) [arm64]

• dep: libgzstream0 (>= 1.5+dfsg)

  provide functionality of zlib C-library in a C++ iostream

• dep: libhdf5-103

  Hierarchical Data Format 5 (HDF5) - runtime files - serial version

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  или liblapack.so.3

  виртуален пакет, предлаган от libatlas3-base, liblapack3, libopenblas-base

• dep: libstdc++6 (>= 7)

  GNU Standard C++ Library v3

• dep: libtext-csv-perl

  comma-separated values manipulator (using XS or PurePerl)

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• sug: fsm-lite

  frequency-based string mining (lite)

Изтегляне на seer

Изтегляне за всички налични архитектури

Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
amd64	1.1.4-2+b2	397,1 кБ	1 716,0 кБ	[списък на файловете]
arm64	1.1.4-2+b2	361,0 кБ	1 568,0 кБ	[списък на файловете]
armhf	1.1.4-2+b2	320,1 кБ	1 039,0 кБ	[списък на файловете]
i386	1.1.4-2+b2	405,3 кБ	1 695,0 кБ	[списък на файловете]