套件：rna-star（2.7.11b+dfsg-2 以及其他的）

[ 原始碼： rna-star  ]

ultrafast universal RNA-seq aligner

Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.

標籤: 生物學: 核酸, 領域: 生物學, field::biology:bioinformatics, implemented-in::c++, 角色: 程式, Purpose: use::analysing, works-with::biological-sequence

其他與 rna-star 有關的套件

• dep: libc6 (>= 2.38)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.3.1)

  GCC 支援函式庫

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

下載 rna-star

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
amd64	2.7.11b+dfsg-2+b2	3，410。7 kB	22，204。0 kB	[檔案列表]
arm64	2.7.11b+dfsg-2+b2	711。5 kB	2，700。0 kB	[檔案列表]
mips64el	2.7.11b+dfsg-2+b2	672。4 kB	2，998。0 kB	[檔案列表]
ppc64el	2.7.11b+dfsg-2+b2	744。2 kB	3，084。0 kB	[檔案列表]
riscv64	2.7.11b+dfsg-2+b2	745。0 kB	2，276。0 kB	[檔案列表]