套件：rna-star（2.7.10b+dfsg-2 以及其他的）
rna-star 的相關連結
Debian 的資源：
下載原始碼套件 rna-star：
- [rna-star_2.7.10b+dfsg-2.dsc]
- [rna-star_2.7.10b+dfsg.orig.tar.xz]
- [rna-star_2.7.10b+dfsg-2.debian.tar.xz]
維護小組：
- Debian Med Packaging Team (QA 頁面, 郵件存檔)
- Steffen Moeller (QA 頁面)
- Andreas Tille (QA 頁面)
- Sascha Steinbiss (QA 頁面)
外部的資源：
- 主頁 [github.com]
相似套件：
ultrafast universal RNA-seq aligner
Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.
其他與 rna-star 有關的套件
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- dep: libc6 (>= 2.34)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [除 ppc64el]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.4.4) [ppc64el]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3