Package: rna-star (2.7.11b+dfsg-2 and others)

[ Source: rna-star  ]

ultrafast universal RNA-seq aligner

Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Role: Program, Purpose: use::analysing, works-with::biological-sequence

Other Packages Related to rna-star

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.3.1)

  GCC support library

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

Download rna-star

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	2.7.11b+dfsg-2+b1	3,461.8 kB	22,228.0 kB	[list of files]
arm64	2.7.11b+dfsg-2+b1	709.7 kB	2,700.0 kB	[list of files]
mips64el	2.7.11b+dfsg-2+b1	673.6 kB	2,998.0 kB	[list of files]
ppc64el	2.7.11b+dfsg-2+b1	743.6 kB	3,084.0 kB	[list of files]
riscv64	2.7.11b+dfsg-2+b1	752.2 kB	2,276.0 kB	[list of files]