套件：ragout（2.3-5 以及其他的）

[ 原始碼： ragout  ]

Reference-Assisted Genome Ordering UTility

Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).

The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.

Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.

其他與 ragout 有關的套件

• dep: libc6 (>= 2.34) [除 arm64]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

  dep: libc6 (>= 2.38) [arm64]

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, i386, riscv64]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libstdc++6 (>= 13.1) [除 arm64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [arm64]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-networkx

  tool to create, manipulate and study complex networks (Python3)

• dep: python3-six

  Python 2 and 3 compatibility library

• rec: sibelia

  comparative genomics tool

下載 ragout

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
amd64	2.3-5	2，072。9 kB	9，659。0 kB	[檔案列表]
arm64	2.3-5+b1	2，064。1 kB	9，664。0 kB	[檔案列表]
armel	2.3-5	2，063。8 kB	9，629。0 kB	[檔案列表]
armhf	2.3-5	2，066。9 kB	9，585。0 kB	[檔案列表]
i386	2.3-5	2，085。3 kB	9，673。0 kB	[檔案列表]
mips64el	2.3-5	2，072。5 kB	9，801。0 kB	[檔案列表]
ppc64el	2.3-5	2，077。4 kB	9，791。0 kB	[檔案列表]
riscv64	2.3-5	2，072。2 kB	9，607。0 kB	[檔案列表]
s390x	2.3-5	2，075。7 kB	9，683。0 kB	[檔案列表]