软件包：ragout（2.3-5 以及其他的）

[ 源代码： ragout  ]

Reference-Assisted Genome Ordering UTility

Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).

The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.

Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.

其他与 ragout 有关的软件包

• dep: libc6 (>= 2.34) [除 arm64]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.38) [arm64]

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, i386, riscv64]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libstdc++6 (>= 13.1) [除 arm64]

  GNU 标准 C++ 库，第3版

  dep: libstdc++6 (>= 14) [arm64]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-networkx

  tool to create, manipulate and study complex networks (Python3)

• dep: python3-six

  Python 2 and 3 compatibility library

• rec: sibelia

  comparative genomics tool

下载 ragout

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	2.3-5	2,072.9 kB	9,659.0 kB	[文件列表]
arm64	2.3-5+b1	2,064.1 kB	9,664.0 kB	[文件列表]
armel	2.3-5	2,063.8 kB	9,629.0 kB	[文件列表]
armhf	2.3-5	2,066.9 kB	9,585.0 kB	[文件列表]
i386	2.3-5	2,085.3 kB	9,673.0 kB	[文件列表]
mips64el	2.3-5	2,072.5 kB	9,801.0 kB	[文件列表]
ppc64el	2.3-5	2,077.4 kB	9,791.0 kB	[文件列表]
riscv64	2.3-5	2,072.2 kB	9,607.0 kB	[文件列表]
s390x	2.3-5	2,075.7 kB	9,683.0 kB	[文件列表]