[ 原始碼： pairtools ]
套件：python3-pairtools（1.0.3-1）
Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C experiment.
Process pair-end sequence alignments and perform the following operations:
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
其他與 python3-pairtools 有關的套件
|
|
|
|
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.4) [除 amd64, arm64, ppc64el]
-
- dep: libgcc-s1 (>= 3.0) [除 armel, armhf]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.13)
- dep: python3 (>= 3.11~)
-
- dep: python3-bioframe
- library to enable flexible, scalable operations on genomic interval dataframes
-
- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
-
- dep: python3-numpy (>= 1:1.22.0)
- Fast array facility to the Python language (Python 3)
-
- dep: python3-numpy-abi9
- 本虛擬套件由這些套件填實： python3-numpy
-
- dep: python3-pandas
- data structures for "relational" or "labeled" data
-
- dep: python3-pysam (>= 0.20.0+ds-3~)
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: python3-scipy
- scientific tools for Python 3
-
- dep: python3-yaml
- YAML parser and emitter for Python3
-
- sug: python3-pairtools-examples (>= 1.0.2)
- Process sequencing data from a Hi-C experiment (examples)