套件：libtfbs-perl（0.7.1+ds-4 以及其他的）

[ 原始碼： libtfbs-perl  ]

scanning DNA sequence with a position weight matrix

The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.

If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".

Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>

標籤: 軟體開發: Perl 開發, 函式庫, 領域: field::biology, field::biology:bioinformatics, 實做語言: C, implemented-in::perl, interface::commandline, 角色: 開發用函式庫, 程式

其他與 libtfbs-perl 有關的套件

• dep: bioperl

  Perl tools for computational molecular biology

• dep: libc6 (>= 2.38)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libdbi-perl

  Perl Database Interface (DBI)

• dep: libwww-perl

  simple and consistent interface to the world-wide web

• dep: pdl (>= 1:2.093-1+b1)

  perl data language: Perl extensions for numerics

• dep: pdlapi-20

  本虛擬套件由這些套件填實： pdl

• dep: perl (>= 5.40.0-6)

  Larry Wall's Practical Extraction and Report Language

• dep: perlapi-5.40.0

  本虛擬套件由這些套件填實： perl-base

• rec: libgd-gd2-perl

  本虛擬套件由這些套件填實： libgd-perl

  或者 libgd-gd2-noxpm-perl

  本虛擬套件由這些套件填實： libgd-perl

下載 libtfbs-perl

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
amd64	0.7.1+ds-4+b1	216。4 kB	981。0 kB	[檔案列表]
arm64	0.7.1+ds-4+b1	216。7 kB	1，029。0 kB	[檔案列表]
armel	0.7.1+ds-4+b1	217。6 kB	981。0 kB	[檔案列表]
armhf	0.7.1+ds-4+b1	215。8 kB	977。0 kB	[檔案列表]
i386	0.7.1+ds-4+b1	217。0 kB	981。0 kB	[檔案列表]
mips64el	0.7.1+ds-4+b1	216。5 kB	1，030。0 kB	[檔案列表]
ppc64el	0.7.1+ds-4+b1	217。3 kB	1，029。0 kB	[檔案列表]
riscv64	0.7.1+ds-4+b1	216。6 kB	977。0 kB	[檔案列表]
s390x	0.7.1+ds-4+b1	216。5 kB	981。0 kB	[檔案列表]