Pakket: libtfbs-perl (0.7.1+ds-4 en anderen)

[ Bron: libtfbs-perl  ]

scanning DNA sequence with a position weight matrix

The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.

If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".

Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>

Tags: Softwareontwikkeling: Ontwikkelen in Perl, Bibliotheken, Field: field::biology, field::biology:bioinformatics, Implemented in: C, implemented-in::perl, interface::commandline, Role: Development Library, Program

Andere aan libtfbs-perl gerelateerde pakketten

• dep: bioperl

  Perl tools for computational molecular biology

• dep: libc6 (>= 2.38)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libdbi-perl

  Perl Database Interface (DBI)

• dep: libwww-perl

  simple and consistent interface to the world-wide web

• dep: pdl (>= 1:2.093-1+b1) [niet arm64, armhf, riscv64]

  perl data language: Perl extensions for numerics

  dep: pdl (>= 1:2.100-1) [arm64, armhf, riscv64]

• dep: pdlapi-20

  virtueel pakket geboden door pdl

• dep: perl (>= 5.40.0-6) [niet arm64, armhf, riscv64]

  Larry Wall's Practical Extraction and Report Language

  dep: perl (>= 5.40.1-2) [arm64, armhf, riscv64]

• dep: perlapi-5.40.0 [niet arm64, armhf, riscv64]

  virtueel pakket geboden door perl-base

• dep: perlapi-5.40.1 [arm64, armhf, riscv64]

  virtueel pakket geboden door perl-base

• rec: libgd-gd2-perl

  virtueel pakket geboden door libgd-perl

  of libgd-gd2-noxpm-perl

  virtueel pakket geboden door libgd-perl

libtfbs-perl downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	0.7.1+ds-4+b1	216,4 kB	981,0 kB	[overzicht]
arm64	0.7.1+ds-4+b2	218,6 kB	1.029,0 kB	[overzicht]
armel	0.7.1+ds-4+b1	217,6 kB	981,0 kB	[overzicht]
armhf	0.7.1+ds-4+b2	217,6 kB	1.029,0 kB	[overzicht]
i386	0.7.1+ds-4+b1	217,0 kB	981,0 kB	[overzicht]
mips64el	0.7.1+ds-4+b1	216,5 kB	1.030,0 kB	[overzicht]
ppc64el	0.7.1+ds-4+b1	217,3 kB	1.029,0 kB	[overzicht]
riscv64	0.7.1+ds-4+b2	217,6 kB	977,0 kB	[overzicht]
s390x	0.7.1+ds-4+b1	216,5 kB	981,0 kB	[overzicht]