套件：ea-utils（1.1.2+dfsg-9 以及其他的）

[ 原始碼： ea-utils  ]

command-line tools for processing biological sequencing data

Ea-utils provides a set of command-line tools for processing biological sequencing data, barcode demultiplexing, adapter trimming, etc.

Primarily written to support an Illumina based pipeline - but should work with any FASTQs.

Main Tools are:

 * fastq-mcf

Scans a sequence file for adapters, and, based on a log-scaled threshold, determines a set of clipping parameters and performs clipping. Also does skewing detection and quality filtering.

 * fastq-multx

Demultiplexes a fastq. Capable of auto-determining barcode id's based on a master set fields. Keeps multiple reads in-sync during demultiplexing. Can verify that the reads are in-sync as well, and fail if they're not.

 * fastq-join

Similar to audy's stitch program, but in C, more efficient and supports some automatic benchmarking and tuning. It uses the same "squared distance for anchored alignment" as other tools.

 * varcall

Takes a pileup and calculates variants in a more easily parameterized manner than some other tools.

其他與 ea-utils 有關的套件

• dep: libc6 (>= 2.38)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, i386, riscv64]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libgsl28 (>= 2.8+dfsg)

  GNU Scientific Library (GSL) -- library package

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-formula

  GNU R package for extended model formulas

• dep: r-cran-getopt

  GNU R package providing command-line parsing functionality

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-hmisc

  GNU R miscellaneous functions by Frank Harrell

• dep: r-cran-lattice

  GNU R package for 'Trellis' graphics

• dep: r-cran-survival

  GNU R package for survival analysis

• dep: zlib1g (>= 1:1.2.3.3)

  壓縮函式庫 - 跑程式時用(runtime)

• rec: med-config (>= 2.1)

  Debian Med general config package

下載 ea-utils

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
amd64	1.1.2+dfsg-9+b3	239。9 kB	762。0 kB	[檔案列表]
arm64	1.1.2+dfsg-9+b3	215。3 kB	1，002。0 kB	[檔案列表]
armel	1.1.2+dfsg-9+b3	213。0 kB	699。0 kB	[檔案列表]
armhf	1.1.2+dfsg-9+b3	210。8 kB	547。0 kB	[檔案列表]
i386	1.1.2+dfsg-9+b3	250。4 kB	779。0 kB	[檔案列表]
mips64el	1.1.2+dfsg-9+b3	232。0 kB	1，093。0 kB	[檔案列表]
ppc64el	1.1.2+dfsg-9+b3	243。5 kB	1，066。0 kB	[檔案列表]
riscv64	1.1.2+dfsg-9+b2	234。3 kB	638。0 kB	[檔案列表]
s390x	1.1.2+dfsg-9+b3	234。9 kB	786。0 kB	[檔案列表]