软件包：ea-utils（1.1.2+dfsg-9 以及其他的）

[ 源代码： ea-utils  ]

command-line tools for processing biological sequencing data

Ea-utils provides a set of command-line tools for processing biological sequencing data, barcode demultiplexing, adapter trimming, etc.

Primarily written to support an Illumina based pipeline - but should work with any FASTQs.

Main Tools are:

 * fastq-mcf

Scans a sequence file for adapters, and, based on a log-scaled threshold, determines a set of clipping parameters and performs clipping. Also does skewing detection and quality filtering.

 * fastq-multx

Demultiplexes a fastq. Capable of auto-determining barcode id's based on a master set fields. Keeps multiple reads in-sync during demultiplexing. Can verify that the reads are in-sync as well, and fail if they're not.

 * fastq-join

Similar to audy's stitch program, but in C, more efficient and supports some automatic benchmarking and tuning. It uses the same "squared distance for anchored alignment" as other tools.

 * varcall

Takes a pileup and calculates variants in a more easily parameterized manner than some other tools.

其他与 ea-utils 有关的软件包

• dep: libc6 (>= 2.38)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, i386, riscv64]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libgsl28 (>= 2.8+dfsg)

  GNU Scientific Library (GSL) -- library package

• dep: libstdc++6 (>= 13.1)

  GNU 标准 C++ 库，第3版

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-formula

  GNU R package for extended model formulas

• dep: r-cran-getopt

  GNU R package providing command-line parsing functionality

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-hmisc

  GNU R miscellaneous functions by Frank Harrell

• dep: r-cran-lattice

  GNU R package for 'Trellis' graphics

• dep: r-cran-survival

  GNU R package for survival analysis

• dep: zlib1g (>= 1:1.2.3.3)

  压缩库 - 运行时

• rec: med-config (>= 2.1)

  Debian Med general config package

下载 ea-utils

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	1.1.2+dfsg-9+b3	239.9 kB	762.0 kB	[文件列表]
arm64	1.1.2+dfsg-9+b3	215.3 kB	1,002.0 kB	[文件列表]
armel	1.1.2+dfsg-9+b3	213.0 kB	699.0 kB	[文件列表]
armhf	1.1.2+dfsg-9+b3	210.8 kB	547.0 kB	[文件列表]
i386	1.1.2+dfsg-9+b3	250.4 kB	779.0 kB	[文件列表]
mips64el	1.1.2+dfsg-9+b3	232.0 kB	1,093.0 kB	[文件列表]
ppc64el	1.1.2+dfsg-9+b3	243.5 kB	1,066.0 kB	[文件列表]
riscv64	1.1.2+dfsg-9+b2	234.3 kB	638.0 kB	[文件列表]
s390x	1.1.2+dfsg-9+b3	234.9 kB	786.0 kB	[文件列表]