套件：ea-utils（1.1.2+dfsg-9 以及其他的）

[ 原始碼： ea-utils  ]

command-line tools for processing biological sequencing data

Ea-utils provides a set of command-line tools for processing biological sequencing data, barcode demultiplexing, adapter trimming, etc.

Primarily written to support an Illumina based pipeline - but should work with any FASTQs.

Main Tools are:

 * fastq-mcf

Scans a sequence file for adapters, and, based on a log-scaled threshold, determines a set of clipping parameters and performs clipping. Also does skewing detection and quality filtering.

 * fastq-multx

Demultiplexes a fastq. Capable of auto-determining barcode id's based on a master set fields. Keeps multiple reads in-sync during demultiplexing. Can verify that the reads are in-sync as well, and fail if they're not.

 * fastq-join

Similar to audy's stitch program, but in C, more efficient and supports some automatic benchmarking and tuning. It uses the same "squared distance for anchored alignment" as other tools.

 * varcall

Takes a pileup and calculates variants in a more easily parameterized manner than some other tools.

其他與 ea-utils 有關的套件

• dep: libc6 (>= 2.37) [sh4]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

  dep: libc6 (>= 2.38) [除 alpha, ia64, loong64, sh4]

  dep: libc6 (>= 2.39) [loong64]

• dep: libc6.1 (>= 2.32) [ia64]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6.1-udeb

  dep: libc6.1 (>= 2.34) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, loong64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC 支援函式庫

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC 支援函式庫

• dep: libgsl27 (>= 2.7.1) [ia64]

  GNU Scientific Library (GSL) -- library package

• dep: libgsl28 (>= 2.8+dfsg) [除 ia64]

  GNU Scientific Library (GSL) -- library package

• dep: libgslcblas0 (>= 2.8) [sparc64]

  GNU Scientific Library (GSL) -- blas library package

• dep: libstdc++6 (>= 11) [ia64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [除 ia64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-formula

  GNU R package for extended model formulas

• dep: r-cran-getopt

  GNU R package providing command-line parsing functionality

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-hmisc

  GNU R miscellaneous functions by Frank Harrell

• dep: r-cran-lattice

  GNU R package for 'Trellis' graphics

• dep: r-cran-survival

  GNU R package for survival analysis

• dep: zlib1g (>= 1:1.2.3.3)

  壓縮函式庫 - 跑程式時用(runtime)

• rec: med-config (>= 2.1)

  Debian Med general config package

下載 ea-utils

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
alpha （非官方移植版）	1.1.2+dfsg-9+b2	239。0 kB	1，069。0 kB	[檔案列表]
amd64	1.1.2+dfsg-9+b3	239。9 kB	762。0 kB	[檔案列表]
arm64	1.1.2+dfsg-9+b3	215。3 kB	1，002。0 kB	[檔案列表]
armel	1.1.2+dfsg-9+b3	213。0 kB	699。0 kB	[檔案列表]
armhf	1.1.2+dfsg-9+b3	210。8 kB	547。0 kB	[檔案列表]
hppa （非官方移植版）	1.1.2+dfsg-9+b2	236。4 kB	747。0 kB	[檔案列表]
i386	1.1.2+dfsg-9+b3	250。4 kB	779。0 kB	[檔案列表]
ia64 （非官方移植版）	1.1.2+dfsg-9+b1	300。4 kB	1，332。0 kB	[檔案列表]
loong64 （非官方移植版）	1.1.2+dfsg-9+b1	215。7 kB	762。0 kB	[檔案列表]
m68k （非官方移植版）	1.1.2+dfsg-9+b2	218。7 kB	731。0 kB	[檔案列表]
mips64el	1.1.2+dfsg-9+b3	232。0 kB	1，093。0 kB	[檔案列表]
ppc64 （非官方移植版）	1.1.2+dfsg-9+b2	242。5 kB	1，066。0 kB	[檔案列表]
ppc64el	1.1.2+dfsg-9+b3	243。5 kB	1，066。0 kB	[檔案列表]
riscv64	1.1.2+dfsg-9+b2	234。3 kB	638。0 kB	[檔案列表]
s390x	1.1.2+dfsg-9+b3	234。9 kB	786。0 kB	[檔案列表]
sh4 （非官方移植版）	1.1.2+dfsg-9+b2	262。5 kB	998。0 kB	[檔案列表]
sparc64 （非官方移植版）	1.1.2+dfsg-9+b2	214。9 kB	7，288。0 kB	[檔案列表]
x32 （非官方移植版）	1.1.2+dfsg-9+b2	237。3 kB	735。0 kB	[檔案列表]