[ 原始碼： canu ]
套件：canu（2.2+dfsg-5）
single molecule sequence assembler for genomes
Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).
Canu is a hierarchical assembly pipeline which runs in four steps:
* Detect overlaps in high-noise sequences using MHAP * Generate corrected sequence consensus * Trim corrected sequences * Assemble trimmed corrected sequences
其他與 canu 有關的套件
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- dep: gnuplot-nox
- Command-line driven interactive plotting program. No-X package
同時作為一個虛擬套件由這些套件填實： gnuplot-qt, gnuplot-x11 - 或者 gnuplot
- Command-line driven interactive plotting program.
同時作為一個虛擬套件由這些套件填實： gnuplot-nox, gnuplot-qt, gnuplot-x11
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- dep: libc6 (>= 2.34)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libfilesys-df-perl
- Module to obtain filesystem disk space information
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- dep: libgcc-s1 (>= 4.2)
- GCC 支援函式庫
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libsnappy1v5 (>= 1.1.10)
- fast compression/decompression library
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: mhap
- locality-sensitive hashing to detect long-read overlaps
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: nanopolish
- consensus caller for nanopore sequencing data